PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0003700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB
Protein Properties Length: 175aa    MW: 20198.7 Da    PI: 11.035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0003700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-18451148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v q+G g+W++I+++ g++R++k+c++rw++yl
  Spipo17G0003700  4 KGAWTPEEDALLQRCVLQYGEGQWHLIPERAGLRRCRKSCRLRWLNYL 51
                     79********************************************97 PP

2Myb_DNA-binding42.61.4e-1357101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E +l+++++++lG+  W++Ia +++ gRt++++k++w++ 
  Spipo17G0003700  57 RGAFQEDEVDLIIRLHRLLGNI-WSLIAGRIP-GRTANDIKNYWNSC 101
                      899*****************99.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.436155IPR017930Myb domain
SuperFamilySSF466898.8E-27298IPR009057Homeodomain-like
SMARTSM007177.6E-15353IPR001005SANT/Myb domain
PfamPF002497.8E-17451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-23558IPR009057Homeodomain-like
CDDcd001678.00E-11651No hitNo description
SMARTSM007178.2E-1056104IPR001005SANT/Myb domain
PROSITE profilePS5129416.62556106IPR017930Myb domain
PfamPF002491.1E-1257101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2159105IPR009057Homeodomain-like
CDDcd001674.21E-86299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
KIRKGAWTPE EDALLQRCVL QYGEGQWHLI PERAGLRRCR KSCRLRWLNY LKPSIKRGAF  60
QEDEVDLIIR LHRLLGNIWS LIAGRIPGRT ANDIKNYWNS CLCKKVGAQG KVARKIYKRS  120
TIGMASETYN SCIWGRAMLS PRLAHSPEAI LGCRHEIFRP RPRTTKFSGK QKQAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2441087110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062250.19e-57PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV91e-52MY113_ARATH; Transcription factor MYB113
TrEMBLA0A059BTP45e-57A0A059BTP4_EUCGR; Uncharacterized protein
TrEMBLA2A1092e-56A2A109_IPOBA; R2R3 MYB related transcription factor
TrEMBLA2A1072e-56A2A107_IPOBA; R2R3 MYB related transcription factor
STRINGSolyc10g086250.1.16e-55(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-54myb domain protein 113